PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00681g00412.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 98aa    MW: 10771 Da    PI: 5.1098
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00681g00412.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.51.1e-111056347
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                               W+ e d  + +a + ++ g   +W++Ia+ ++ g+tl ++k+++  +
  Peaxi162Scf00681g00412.1 10 VWSIEQDIAFENALATHPEGsadRWERIAADVP-GKTLVEVKNHYKLL 56
                              6********************************.***********876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.609357IPR017877Myb-like domain
SMARTSM007176.7E-8759IPR001005SANT/Myb domain
SuperFamilySSF466895.16E-12965IPR009057Homeodomain-like
PfamPF002499.2E-91056IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-61158IPR009057Homeodomain-like
CDDcd001673.61E-91157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MTVAKSRSSV WSIEQDIAFE NALATHPEGS ADRWERIAAD VPGKTLVEVK NHYKLLLDDV  60
SRIESGYVPL PCYNSSFDSF LSHGDDERTG KKSGISAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-16176176RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016572400.19e-49PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H73e-18DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0V0I5F03e-48A0A0V0I5F0_SOLCH; Putative transcription factor DIVARICATA-like
STRINGPGSC0003DMT4000651023e-44(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41492445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.13e-29MYB family protein